/*
 * common.cc
 *
 *  Created on: Dec 2, 2012
 *      Author: hxin
 */

#include "common.h"

int _g_KmerLength = 10;

int _g_shortHTLength = 13;
int _g_midHTLength = 26;
int _g_longHTLength = 39;

type_config aligner_config = FAKE_ALIGN_BASE;

type_config analyser_config = FAKE_ALIGN_BASE;

int compareEntrySize(const void *a, const void *b) {
	return ((*(keyStruct*) a).key_entry_size - (*(keyStruct*) b).key_entry_size);
}
